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J. Clarke, “Vortices and hearts,” Nature “News and Views” 425, 133 (2003).

J. C. Davis, “Fourier transform scanning tunneling spectroscopy: a new window on the electronic structure of Bi2Sr2CaCu208+a,” Acta Phys. Pol.A 104, 193 (2003).

K. McElroy, J.E. Hoffman, H. Eisaki, S. Uchida and J.C. Davis, “Fourier transform scanning tunneling spectroscopy studies of the electronic structure of superconducting Bi2Sr2CaCu208+a,” AIP Conference Proceedings 696, 1 (2003).

Z. Nussinov, M. F. Crommie and A.V Balatsky, “Noise spectroscopy of a single spin with spin polarized STM,” Phys. Rev. B 68, 085402 (2003).

J. Zhang, J. Vala, S. Sastry and K.B. Whaley, “Geometric theory of nonlocal two-qubit operations,” Phys. Rev. A 67, 042313 (2003).

J. Zhang, J. Vala, S. Sastry and K.B. Whaley, “Exact two-qubit universal quantum circuit,” Phys. Rev. Lett. 91, 027903 (2003).

D. M. Eigler, C.P. Lutz, M.F. Crommie, H.C. Manoharan, A.J. Heinrich and J.A. Gupta, “Information transport and computation in nanometer-scale structures,” Phil. Trans. Royal Soc. 362, 1135 (2004).

T. Hanaguri, C. Lupien, Y. Kohsaka, D.-H. Lee, M. Azuma, M. Takano, H. Takagi and J.C. Davis, “A ‘checkerboard’ electronic crystal state in lightly hole-doped Ca2-xNaxCu02C12,” Nature 430, 1001 (2004).

S. Linzen, T.L. Robertson, T. Hime, B.L.T. Plourde, P. A. Reichardt and J. Clarke, “Low-noise computer-controlled current source for quantum coherence experiments,” Rev. Sci. Instr. 75, 2541 (2004).

Z. Nussinov, J.X. Zhu, A.V. Balatsky, A. Shnirman, M.F. Crommie and Y. Manassen, “Single spin detection and noise spectroscopy,” Proceedings of SPIE 5472, 116 (2004).

B.L.T. Plourde, J. Zhang, K.B. Whaley, F.K. Wilhelm, T.L. Robertson, T. Hime, S. Linzen, P.A. Reichardt, C.-E. Wu and J. Clarke, “Entangling flux qubits with a bipolar dynamic inductance,” Phys. Rev. B (Rapid Communications) 70, 140501 (2004).

D. J. Van Harlingen, T.L. Robertson, B.L.T. Plourde, T.A. Crane and J. Clarke, “Decoherence in Josephson-junction qubits due to critical current fluctuations,” Phys. Rev. B 70, 064517 (2004).

L. Senapati, J. Schrier and K.B. Whalley, “Electronic transport, structure and energetics of endohedral Gd@C82 metallofullerene,” Nano Lett. (Communication) 4, 2073 (2004).

J. Zhang, J. Vala, S. Sastry and K.B. Whaley, “Optimal quantum circuit synthesis from controlled-unitary gates,” Phys. Rev. A 69, 042309 (2004).

J. Zhang, J. Vala, S. Sastry and K.B. Whaley, “Minimum construction of two-qubit quantum operations,” Phys. Rev. Lett. 93, 020502 (2004).

R. de Sousa, N. Shenvi and K.B. Whaley, “Qubit coherence control in a nuclear spin bath,” Phys. Rev. B 72, 045330 (2005).

R. de Sousa, K.B. Whaley, F. K. Wilhelm and J. von Delft, “Ohmic noise from a single defect center hybridized with a Fermi sea,” Phys. Rev. Lett 95, 247006 (2005).

M. Grobis, K. H. Khoo, R. Yamachika, Xinghua Lu, K. Nagaoka, S. G. Louis, M.F. Crommie, H. Kato and H. Shinohara, “Spatially dependent inelastic tunneling in a single metallofullerene,” Phys. Rev. Lett. 94, 136802 (2005).

S. Lee, P. von Allmen, F. Oyafuso, G. Klimeck and K.B. Whaley, “Effect of electron-nuclear spin interaction on electron-spin qubits localized in self-assembled quantum dots,” J. Appl. Phys. 97, 043706 (2005).

K. McElroy, D.-H. Lee, J.E. Hoffman, K.M. Lang, J. Lee, H. Eisaki, S. Uchida and J.C. Davis, “Coincidence of ‘checkerboard’ charge order and antinodal state decoherence in strongly underdoped superconducting Bi2Sr2CaCu2O8,” Phys. Rev. Lett. 94, 197005 (2005).

K. McElroy, Jinho Lee, James Slezak, D.-H. Lee, H. Eisaki, S. Uchida and J.C. Davis, “Atomic-scale sources and mechanism of nanoscale electronic disorder in Bi2Sr2CaCu2O8,” Phys. Rev. Lett. 94, 197005 (2005).

M. Muck, M. Korn, C. Mugford, J.B. Kycla and J. Clarke, “Measurements of l/f noise in Josephson junctions at zero voltage: implications for decoherence in superconducting quantum bits,” Appl. Phys. Lett. 86, 012510 (2005).

B.L.T. Plourde, T. L. Roberson, P. A. Reichardt, T. Hime, S. Linzen, C.-E. Wu and J. Clarke, “Flux qubits and readout device with two independent flux lines,” Phys. Rev. B 72, 060506 (2005).

T.L. Robertson, B.L.T. Plourde, T. Hime, S. Linzen, P.A. Reichardt, F.K. Wilhelm and J. Clarke, “Superconducting quantum interference device with frequency dependent damping: readout of flux qubits,” Phys. Rev. B 72, 024513 (2005).

J. Schrier and K.B. Whaley, “Atomistic theory of coherent spin transfer between molecularly bridged quantum dots,” Phys. Rev. B 72, 085320 (2005).

L. Senapati, J. Schrier and K.B. Whaley, “Reply to Comment: ‘Electronic transport, structure, and energetics of endohedral Gc@C82 metalofullerene,’” Nano Lett. 5, 2341 (2005).

N. Shenvi, R. de Sousa and K.B. Whaley, “Nonperturbative bounds on electron spin coherence times induced by hyperfine interactions,” Phys. Rev. B 71, 144419 (2005).

N. Shenvi, R. de Sousa and K. B. Whaley, “Universal scaling of hyperfine-induced electron spin echo decay,” Phys. Rev. B 71, 224411 (2005).

M.J. Storcz, F. K. Wilhelm, J. Vala, K.R. Brown, J. Kempe and K.B. Whaley, “Full protection of superconducting qubit systems from coupling errors,” Phys. Rev. B 72, 064511 (2005).

J. Zhang and K.B. Whaley, “Generation of quantum logic operations from physical Hamiltonians,” Phys. Rev. A 71, 052317 (2005).

J. Zhang and K.B. Whaley, “Optimal generation of single-qubit operations from an always-on interaction by algebraic decoupling,” Phys. Rev. A 73, 022306 (2006).

Y. Yayon, Xinghua Lu and M.F. Crommie, “Bimodal electronic structure of isolated Co atoms on Pt (111),“ Phys. Rev. B (status?).